PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta007870
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 326aa    MW: 36733.5 Da    PI: 4.412
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-51251PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.2e-152269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l+  v+++G g+W+  ar  g+ Rt+k+c++rw +yl
        Pta007870 22 KGPWTVEEDMQLIGIVNLHGEGRWNFLARASGLQRTGKSCRLRWVNYL 69
                     79********************************************97 PP
2Myb_DNA-binding50.84e-1675118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r + T+eE+ l++++++++G++ W++Ia+ ++ gRt++++k++w++
        Pta007870  75 RSKITPEEERLIIELHRRWGNR-WSRIAQSLP-GRTDNEIKNFWRT 118
                      6788******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.6581769IPR017930Myb domain
SuperFamilySSF466894.87E-3020116IPR009057Homeodomain-like
SMARTSM007172.5E-122171IPR001005SANT/Myb domain
PfamPF002491.5E-132269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-222376IPR009057Homeodomain-like
CDDcd001673.77E-102469No hitNo description
PROSITE profilePS5129424.36270124IPR017930Myb domain
SMARTSM007171.6E-1474122IPR001005SANT/Myb domain
PfamPF002496.7E-1576118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2477124IPR009057Homeodomain-like
CDDcd001672.72E-1279118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MANRSLWGGS DFDYENEADT RKGPWTVEED MQLIGIVNLH GEGRWNFLAR ASGLQRTGKS  60
CRLRWVNYLR PDLKRSKITP EEERLIIELH RRWGNRWSRI AQSLPGRTDN EIKNFWRTRM  120
KGKLNSETQK DIAGVDADDG VQFESELGSC CLPVISPHAL PEVDVAEPSS SFPQQNAEEI  180
MVQTNTTPSL QNDTPPQVIQ SSEGNSENVL QGGEIDGHYQ INDDGQPGES NPEHLEGPDS  240
VFQKTRLPHT FSVGSLVTLL SSEFFADSAI QDCKISPLSS YVAASPEAVS DSEIYLSCYS  300
DVLWNMDEED NRCFRSWQSA EDTRLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-29221244105C-Myb DNA-Binding Domain
1msf_C9e-29221244105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.193060.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914654.16e-56transcription factor MYB78
TrEMBLA0A0D6QR057e-58A0A0D6QR05_ARACU; Uncharacterized protein
STRINGXP_006446527.12e-53(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.12e-46myb domain protein 24