PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta007874

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

MYB_related

Protein Properties

Length: 326aa MW: 35545.5 Da PI: 7.6605

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-65553	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1e-13	68	112	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++ ++ + ++lG+g+W+ I+r + + Rt+ q+ s+ qky Pta007874 68 PWTEEEHKMFLLGLHKLGKGDWRGISRNFVTSRTPTQVASHAQKY 112 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.161	61	117	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-17	63	118	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-18	64	116	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.7E-11	65	111	IPR009057	Homeodomain-like
SMART	SM00717	7.9E-11	65	115	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-11	68	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.42E-9	68	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MATTPELVXD RGVKLFGVRL TTDEPMRKSL SMGNLPLTPE QSESGAAEDG YVSDGLVQNS 60 RERKKGVPWT EEEHKMFLLG LHKLGKGDWR GISRNFVTSR TPTQVASHAQ KYFLRQSNLN 120 KRKRRSSLFD ISTDSMEDCY QGIPELSPVM HDLSLGQNSS LTSGNFFETG GAPPNLAASV 180 GAFSVPPLAA SRPVIPPCLS LGMYRLDKSD DGERARYEAK YSSLNEAERQ ESGGYSNPTS 240 HYSFTLPFWP DLATKASKII KPSAPTSPSM EARESIENSG LSLSIAPPSV DPPAPHNTVN 300 LDQSNSRRSA FRSSNLDSSS NAISVV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.10818	0.0	root\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024396943.1	3e-69	uncharacterized protein LOC112292572
TrEMBL	A0A3G6JAG3	0.0	A0A3G6JAG3_PINTA; Myb-related protein S3
STRING	PP1S66_90V6.1	1e-68	(Physcomitrella patens)