PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta007882

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 325aa MW: 36139.9 Da PI: 6.4014

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-17342	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	61.4	3e-19	3	60	75	128
NAM 75 nratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ra+ sgyWkatg dk++ s+ ++ vg+kk Lvfy g+ap+g+kt+W+mheyrl Pta007882 3 HRAAGSGYWKATGADKPIPSTasrgVKKRVGVKKALVFYVGKAPSGSKTNWLMHEYRL 60 6999************99877665666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	26.438	1	135	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-19	3	62	IPR003441	NAC domain
Pfam	PF02365	1.4E-9	4	60	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
XAHRAAGSGY WKATGADKPI PSTASRGVKK RVGVKKALVF YVGKAPSGSK TNWLMHEYRL 60 ADINRPARKK DSFRVSNGVF SLFGFXVISH LCWDLVPPLN SIFSMSALSF SMYXSLKVLF 120 LLQLDDWVLC RIYNRKIVAE KLALEPNESF NDVPMETIDE KEMKDEPTST SINHSAIEQS 180 NPSFDHLSKL GSSPTGYNAV PPGASPMNSN IRVQNLDFLQ NSSTPFSGST LKAPAQNTAF 240 NPISPSQTNC NSTELISGLH DDFSCSKASS FSEPIWEKEE VESSFKLENI SQEQQQSLFN 300 FDLEGLQSSF PHLDKISFSD AYQDW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-21	3	141	90	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-21	3	141	90	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-21	3	141	90	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-21	3	141	90	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-21	3	141	93	174	NAC domain-containing protein 19
3swm_B	8e-21	3	141	93	174	NAC domain-containing protein 19
3swm_C	8e-21	3	141	93	174	NAC domain-containing protein 19
3swm_D	8e-21	3	141	93	174	NAC domain-containing protein 19
3swp_A	8e-21	3	141	93	174	NAC domain-containing protein 19
3swp_B	8e-21	3	141	93	174	NAC domain-containing protein 19
3swp_C	8e-21	3	141	93	174	NAC domain-containing protein 19
3swp_D	8e-21	3	141	93	174	NAC domain-containing protein 19
4dul_A	8e-21	3	141	90	171	NAC domain-containing protein 19
4dul_B	8e-21	3	141	90	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.19365	0.0	root\| shoot

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	O65061	1e-133	O65061_PICMA; ATAF1-like protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	4e-26	NAC family protein