PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta007891

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 325aa MW: 37117.8 Da PI: 7.2647

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-35422	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.7	1.6e-51	14	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....k 96 lppGfrFhPtdeel+ +yLk++v+ ++l++ ++i+e+d+yk++PwdLp+k+ +e+ewyfFs+rd+ky++g+r+nr++ksgyWkatg++k++++ + Pta007891 14 LPPGFRFHPTDEELLIHYLKNRVSCSPLPA-SIIAEIDLYKHDPWDLPEKACFGEQEWYFFSPRDRKYPNGSRPNRSAKSGYWKATGTEKPIFVMsesmS 112 79**************************.89***********8777899*********************************99877888 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kk+Lvf+kgr pkg kt+W+mheyrl Pta007891 113 SQKVGVKKSLVFFKGRPPKGLKTNWIMHEYRL 144 888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-62	9	169	IPR003441	NAC domain
PROSITE profile	PS51005	59.891	14	169	IPR003441	NAC domain
Pfam	PF02365	1.7E-26	15	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
XEGAEFHHQV LPQLPPGFRF HPTDEELLIH YLKNRVSCSP LPASIIAEID LYKHDPWDLP 60 EKACFGEQEW YFFSPRDRKY PNGSRPNRSA KSGYWKATGT EKPIFVMSES MSSQKVGVKK 120 SLVFFKGRPP KGLKTNWIMH EYRLIETMPT KKLRSLRLDD WVLCRIYKKA RHSTPVVSNP 180 ELQSPSPADV QQESVMPKFS SVSGQLQSED PFMQSFLSHD VLDANNAAMS YVEPSSSLQV 240 VPQQLNSSGT RSQVSISVGF NCDEVSSVYP AKRQNCLNPS PSLEFEGWNT YMDMPVPDQH 300 RYQLPISENW NPEPIPWPLP TGNVW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-71	14	169	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-71	14	169	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-71	14	169	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-71	14	169	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-71	14	169	20	168	NAC domain-containing protein 19
3swm_B	1e-71	14	169	20	168	NAC domain-containing protein 19
3swm_C	1e-71	14	169	20	168	NAC domain-containing protein 19
3swm_D	1e-71	14	169	20	168	NAC domain-containing protein 19
3swp_A	1e-71	14	169	20	168	NAC domain-containing protein 19
3swp_B	1e-71	14	169	20	168	NAC domain-containing protein 19
3swp_C	1e-71	14	169	20	168	NAC domain-containing protein 19
3swp_D	1e-71	14	169	20	168	NAC domain-containing protein 19
4dul_A	1e-71	14	169	17	165	NAC domain-containing protein 19
4dul_B	1e-71	14	169	17	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:20005003}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012440667.1	1e-88	PREDICTED: NAC transcription factor 25
Refseq	XP_017610410.1	1e-88	PREDICTED: NAC transcription factor 25-like
Swissprot	D2SMN4	1e-82	NAMB1_HORVS; NAC transcription factor NAM-B1
TrEMBL	D5ABS0	1e-117	D5ABS0_PICSI; Uncharacterized protein
STRING	Gorai.009G170700.1	5e-88	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-82	NAC domain containing protein 25

Publications ? help Back to Top
Jamar C, et al. NAM-1gene polymorphism and grain protein content in Hordeum. J. Plant Physiol., 2010. 167(6): p. 497-501 [PMID:20005003]