PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008006
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C2H2
Protein Properties Length: 318aa    MW: 35056.5 Da    PI: 7.8308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-21135PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052254276223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp Cg +Fs+  +L+ H  + H
  Pta008006 254 ECPRCGARFSSVASLVDHVERfH 276
                5*****************99888 PP
2zf-C2H222.72.6e-07290312223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp+Cg++Fs++ +L++H  + H
  Pta008006 290 VCPKCGRTFSNPVSLVQHVEKdH 312
                7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.92E-132472No hitNo description
Gene3DG3DSA:4.10.1110.104.9E-103174IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.7623180IPR000058Zinc finger, AN1-type
SMARTSM001542.4E-43473IPR000058Zinc finger, AN1-type
PfamPF014283.6E-123472IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.3E-11111168IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.49E-9114167No hitNo description
PROSITE profilePS510398.207119166IPR000058Zinc finger, AN1-type
SMARTSM001541.1122163IPR000058Zinc finger, AN1-type
PfamPF014281.8E-8122162IPR000058Zinc finger, AN1-type
SMARTSM003550.66253276IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806253281IPR007087Zinc finger, C2H2
SuperFamilySSF576672.98E-6254308No hitNo description
PROSITE patternPS000280255276IPR007087Zinc finger, C2H2
SMARTSM003550.86289312IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91289317IPR007087Zinc finger, C2H2
PROSITE patternPS000280291312IPR007087Zinc finger, C2H2
PfamPF139137.3E-5291308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
XRIGGTNLNP LYIEFIQVPV YMGTPEFPDL GKHCSVEDCR LVDFLPFDCD RCKQVLCLEH  60
RTYSQHHCPN ANEHDVTVLV CPMCAKGVRL VPNEDPNITW ESHVNTDCDP TNYDRVTKKP  120
RCPAPGCKEI LTFANKVKCR DCAQEICLKH RFGLDHKCPG PKKVEGNFTF SGIFGKNTKE  180
KAMVNARADS SPSSSASQSL RSGFSAVSNL RASAEVGMTK LSSATTDVFN RVKSSTLSMQ  240
QPQEGNRQPV LAEECPRCGA RFSSVASLVD HVERFHESGR KGGIQDLPDV CPKCGRTFSN  300
PVSLVQHVEK DHGGTSIP
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916320.11e-124zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ0D5B91e-109SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLD5ABE60.0D5ABE6_PICSI; Uncharacterized protein
STRINGGorai.006G137400.11e-123(Gossypium raimondii)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]