PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta008090

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

MYB

Protein Properties

Length: 314aa MW: 34564.7 Da PI: 9.7613

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-58895	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.2e-15	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW eEd ll+ +vk++G++ W++I+++m+ + R +k+c +rw +yl Pta008090 4 RQRWRSEEDSLLLSYVKRYGPREWNLISERMNraLDRDPKSCAERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	27.7	6.1e-09	59	104	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+ +++E+ l + + +++G++ Wk+Ia ++ g t+k + +w y+ Pta008090 59 KGSLSEDEQRLVISLQAKYGNR-WKKIATQVP-GTTAKRLSKWWEVYR 104 57789***************.*****.*****99998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.091	1	57	IPR017930	Myb domain
SMART	SM00717	1.5E-12	3	55	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.65E-20	4	100	IPR009057	Homeodomain-like
CDD	cd00167	4.35E-10	6	53	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-19	6	60	IPR009057	Homeodomain-like
Pfam	PF13921	4.0E-15	7	68	No hit	No description
SMART	SM00717	3.7E-7	58	106	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	15.451	58	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-12	61	103	IPR009057	Homeodomain-like
CDD	cd00167	1.33E-5	63	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MKERQRWRSE EDSLLLSYVK RYGPREWNLI SERMNRALDR DPKSCAERWK NYLKPGIKKG 60 SLSEDEQRLV ISLQAKYGNR WKKIATQVPG TTAKRLSKWW EVYREKQDKI KDRNERTIAD 120 SATKIEEGKY DHILETFAEK YMQKQKQLAT SSGCNLPTIA AMPSGLPPPI SFSMPTSSTP 180 DFIHFAIPSA STPTTCSFGA PTPCPPPWMS NRPNSAHGSG AEPFLHSSPL SKSSPSSSSS 240 PSVTLSLSPS SSTPVMSANT ASACSSWKQD TAKQSSENNV SGDSEAAKDK NRGISHVQMP 300 SMDPSNSASA SAAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-16	7	92	10	92	B-MYB
1gv2_A	2e-16	7	92	7	89	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-16	7	92	7	89	C-Myb DNA-Binding Domain
1msf_C	1e-16	7	92	7	89	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002533297.1	2e-71	transcription factor AS1
Refseq	XP_025015577.1	2e-71	transcription factor AS1
TrEMBL	I6LJ18	3e-72	I6LJ18_9LAMI; Phantastica
STRING	XP_002533297.1	7e-71	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	9e-63	MYB family protein