PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008093
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 314aa    MW: 35853.8 Da    PI: 9.0473
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-63796PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.3e-174388147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
        Pta008093 43 RGHWRPAEDAKLKELVSQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 88
                     899*****************************.***********996 PP
2Myb_DNA-binding53.74.8e-1795138146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++e++e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
        Pta008093  95 RRPFSEEDEEKLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 138
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.143889IPR017930Myb domain
SMARTSM007171.9E-144291IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-2843136IPR009057Homeodomain-like
PfamPF002495.3E-164388IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-264496IPR009057Homeodomain-like
CDDcd001671.28E-124687No hitNo description
PROSITE profilePS5129425.68290144IPR017930Myb domain
SMARTSM007174.4E-1594142IPR001005SANT/Myb domain
PfamPF002499.4E-1495137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2097143IPR009057Homeodomain-like
CDDcd001672.52E-1197137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MESSSGHHST KVSSDNNNMG NLGDSNEEVE NSVDGVQSRL CARGHWRPAE DAKLKELVSQ  60
YGPQNWNLIA EKLEGRSGKS CRLRWFNQLD PRINRRPFSE EDEEKLLAAH RLYGNKWAMI  120
ARLFPGRTDN AVKNHWHVIM ARRYREQSSA FGRRKLPQVH RREKRACTDD ETRMGSSSCN  180
MWVDKYSSLK SAHDVIFRRG SVCKSQILGE NSSCVTAFGA SRVDNDERCG NLDRLQQRIS  240
AASIARHQQQ QQQQQQKSYM SSLDAVQSRI FFEGSREMNI NNNYNKAVDV LGSNVDNYHI  300
LVSQMEGESS SHSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-32411435107B-MYB
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.215961e-136root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257780.13e-79PREDICTED: uncharacterized protein LOC104597747
TrEMBLA0A222UAB31e-125A0A222UAB3_GINBI; R2R3MYB12
STRINGXP_010257780.11e-78(Nelumbo nucifera)