PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta008119

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 313aa MW: 35804.2 Da PI: 9.2187

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-73719	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.9	8e-53	32	159	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF Ptdeel+v+yL+k+v+++++++ +i+e+d+yk++Pw+Lp+k+ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg+dk+v++ ++ + Pta008119 32 LPPGFRFYPTDEELMVHYLCKRVASQPFPI-PIIAEIDLYKFDPWQLPEKALFGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPVTAGaNKIK 130 79**************************.88***********8888899**********************************9767778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfykg+ap+g+kt+W+mheyrl Pta008119 131 VGVKKALVFYKGKAPRGVKTNWIMHEYRL 159 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-65	27	186	IPR003441	NAC domain
PROSITE profile	PS51005	61.763	32	186	IPR003441	NAC domain
Pfam	PF02365	1.1E-26	33	159	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
XGFCNFGLAY TCMREIGRMG CKSGPNSEQI NLPPGFRFYP TDEELMVHYL CKRVASQPFP 60 IPIIAEIDLY KFDPWQLPEK ALFGEKEWYF FSPRDRKYPN GSRPNRAAGS GYWKATGTDK 120 PVTAGANKIK VGVKKALVFY KGKAPRGVKT NWIMHEYRLA DSASRAAKRK GSIRLDDWVL 180 CRIYEKHYAT QKNGPKESNE LSSCVDQEED QYMVAAASTS PPDMDDSKLL INLPRINSLN 240 RINSLLKFPT REVMKMPDPN YNQTEQQYSR AETVAGSNSG CQAIEYDQNS PYWEKPSNSD 300 TTMIRWCRTR FLX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-83	18	192	3	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-83	18	192	3	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-83	18	192	3	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-83	18	192	3	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-83	19	192	7	174	NAC domain-containing protein 19
3swm_B	2e-83	19	192	7	174	NAC domain-containing protein 19
3swm_C	2e-83	19	192	7	174	NAC domain-containing protein 19
3swm_D	2e-83	19	192	7	174	NAC domain-containing protein 19
3swp_A	2e-83	19	192	7	174	NAC domain-containing protein 19
3swp_B	2e-83	19	192	7	174	NAC domain-containing protein 19
3swp_C	2e-83	19	192	7	174	NAC domain-containing protein 19
3swp_D	2e-83	19	192	7	174	NAC domain-containing protein 19
4dul_A	1e-83	18	192	3	171	NAC domain-containing protein 19
4dul_B	1e-83	18	192	3	171	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269\|PubMed:25005917}.
Uniprot	TISSUE SPECIFICITY: Expressed in stems, leaf blades and callus. Weakly expressed in developing flowers. {ECO:0000269\|PubMed:10660065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.
UniProt	INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269\|PubMed:18813954, ECO:0000269\|PubMed:20632034}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024392980.1	9e-92	NAC transcription factor 47-like
Refseq	XP_024392981.1	9e-92	NAC transcription factor 47-like
Swissprot	A0A3Q7HH64	2e-87	JA2L_SOLLC; NAC domain-containing protein JA2L
Swissprot	Q52QH4	1e-87	NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBL	A9NPH4	0.0	A9NPH4_PICSI; Uncharacterized protein
STRING	PP1S5_359V6.1	4e-91	(Physcomitrella patens)
STRING	EFJ07841	2e-91	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	6e-88	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Taga Y, et al. Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4. Plant Signal Behav, 2009. 4(8): p. 740-2 [PMID:19820348] Xia N, et al. Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses. Mol. Biol. Rep., 2010. 37(8): p. 3703-12 [PMID:20213512] Takasaki H, et al. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Nakayama A, et al. Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice. BMC Plant Biol., 2013. 13: p. 150 [PMID:24093634] Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice. Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60 [PMID:26766411] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]