PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008226
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 308aa    MW: 33879.3 Da    PI: 10.9488
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S24109515PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.14.2e-1773163186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                +W++  v +L++a+++++   +r+klk+++We+v++++     +++  ++++qCk+k+e+++kry++++++ +++ ++ + s++p++++l+
  Pta008226  73 EWSEGAVTTLLDAYESKWLLRNRAKLKGNDWEDVARHVstraNATKSVKTQTQCKNKIESMKKRYRAEAATLNGNnSNVNASSWPLYSRLD 163
                5*************************************99888888899*******************99988885678899******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.6E-2071163No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
XSHGEEDAYR KEVLTLPANG KGSGSSWGRM GKLDSLEKPL QRPGGSSNNN NNHNANGDVL  60
TLSKTPERVK RDEWSEGAVT TLLDAYESKW LLRNRAKLKG NDWEDVARHV STRANATKSV  120
KTQTQCKNKI ESMKKRYRAE AATLNGNNSN VNASSWPLYS RLDGLLRCRT AAAVAGDANP  180
NPSSNAIGNP PPDLSLMESP PPPLLLPPPP PPVEERERQA EGQGQGQGKG RGREKEKEKE  240
KGKGKGKGKG KKGKGKRKGK GRSRRKWNWP RLRRRWRSSN QADDGSNTIP NRKESAALDT  300
DTSTPRSX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246252KGKGKKG
2263274RRKWNWPRLRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.91230.0embryo| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9SB356e-58A0A0C9SB35_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_928_1942 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.14e-48sequence-specific DNA binding transcription factors