PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008286
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 304aa    MW: 34083.6 Da    PI: 9.0096
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-24715PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed +l ++++ +G g W++ +++ g++R++k+c++rw++yl
        Pta008286 14 RGAWTKTEDIILSEYIRIHGDGGWRSLPKKAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding48.42.1e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg  ++ E+el+++++++lG++ W++Ia +++ gRt++++k++w++
        Pta008286  67 RGDISPAEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      677799****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.552961IPR017930Myb domain
SuperFamilySSF466898.03E-2712108IPR009057Homeodomain-like
SMARTSM007174.0E-111363IPR001005SANT/Myb domain
PfamPF002499.0E-141461IPR001005SANT/Myb domain
CDDcd001673.24E-81661No hitNo description
PROSITE profilePS5129425.65162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-2565116IPR009057Homeodomain-like
SMARTSM007176.2E-1566114IPR001005SANT/Myb domain
PfamPF002496.8E-1467110IPR001005SANT/Myb domain
CDDcd001675.14E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRSPCCAKE GLNRGAWTKT EDIILSEYIR IHGDGGWRSL PKKAGLKRCG KSCRLRWLNY  60
LRPDIKRGDI SPAEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT RLSKKLLLSV  120
NKSQCKSRKN LKSKAKPSPI QNRVFKTTPV KITTTVRLSG TATPNGSMNG YGRSNPSSDK  180
ASKLCNVKET TNSSKSWCEH LGIDTDATIS TSSMSSLPLE RSPHSYYLGA DAAPLAESLL  240
DLNELGLTVS DDQRIEEFYD HTQHLDWIHE LDYAEGPSPQ SLSLLLLESD DEREERLGDH  300
GQIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.24870.0needle| root| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:9839469}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337875.12e-70transcription factor MYB12 isoform X2
RefseqXP_021597362.19e-71transcription factor TT2-like
RefseqXP_023899027.11e-70transcription factor TT2-like
SwissprotQ9S9K92e-62MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A167V9111e-170A0A167V911_PICAB; Transcription factor MYB31
STRINGcassava4.1_012592m4e-70(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.16e-53myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]