PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008455
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 297aa    MW: 33777.8 Da    PI: 7.2091
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-54830PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.7e-171966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l++++k +G+g+W+  +r+ g+ R++k+c++rw++yl
        Pta008455 19 RGAWTASEDKILIEYIKTHGTGQWRGLPRKAGLERSGKSCRLRWLNYL 66
                     89********************************************97 PP
2Myb_DNA-binding55.81e-1772115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eEdellv+++++lG++ W++Ia +++ gRt++++k++w++
        Pta008455  72 RGNISPEEDELLVRLHRLLGNR-WTLIAGRLP-GRTDNEVKNYWNT 115
                      7899******************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2681466IPR017930Myb domain
SuperFamilySSF466893.41E-2917113IPR009057Homeodomain-like
SMARTSM007171.2E-131868IPR001005SANT/Myb domain
PfamPF002494.1E-151966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-222072IPR009057Homeodomain-like
CDDcd001671.19E-102166No hitNo description
PROSITE profilePS512942767121IPR017930Myb domain
SMARTSM007171.3E-1671119IPR001005SANT/Myb domain
PfamPF002497.8E-1672116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2573121IPR009057Homeodomain-like
CDDcd001671.56E-1276115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRSPGCGSP SKHEEHLKRG AWTASEDKIL IEYIKTHGTG QWRGLPRKAG LERSGKSCRL  60
RWLNYLRPDI KRGNISPEED ELLVRLHRLL GNRWTLIAGR LPGRTDNEVK NYWNTQLSKR  120
VQRGEFEPKF QKPFKERAIS SPSSYGKVIV GTDNYTSQIL PLKTRAVRPS ARAITDGDNL  180
HSYDYDHVPD TNYGINQEGC LKALDDHAIE IYTSKSWCQL LLEDCLGDSQ YNQMEEVNAL  240
QPISMTNTSN GTDDQQQHQP HSPSLCQSII LQENDGSSCC DLIQQECPRY KDFISSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27171215108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:9839469}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021293225.11e-62transcription factor MYB4-like
SwissprotQ9S9K91e-56MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A2H4Z0B01e-133A0A2H4Z0B0_9SPER; R2R3 MYB transcription factor
STRINGXP_010666251.11e-61(Beta vulgaris)
STRINGEOY008543e-61(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-59myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]