PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta008477

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

WOX

Protein Properties

Length: 296aa MW: 33172.7 Da PI: 6.7919

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-19506	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.6e-21	120	180	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t++++ql++Le+lF + + +ps+++++e++++l +++e++V++WFqNr+a+ k+ Pta008477 120 RQRWTPSQTQLQILESLFDQgHATPSKQKIKEITMELsqhgQISETNVYNWFQNRKARAKR 180 89***************99************************************97 PP
2	Wus_type_Homeobox	101	8.8e-33	119	182	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtP+++Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNrkaR ++kq Pta008477 119 ARQRWTPSQTQLQILESLFDQGHATPSKQKIKEITMELSQHGQISETNVYNWFQNRKARAKRKQ 182 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.4E-16	115	182	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.88E-16	115	182	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.706	116	181	IPR001356	Homeobox domain
SMART	SM00389	7.7E-13	118	185	IPR001356	Homeobox domain
CDD	cd00086	1.55E-11	120	182	No hit	No description
Pfam	PF00046	9.5E-19	120	180	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
XGRGNAVQNK CIIFTGILAA FVSSKVTEHQ PPGHMPSVTQ GSAMANPNFV ALHNNQVMTE 60 EQMETLRRQI CVYSTICSQL VEMHRAMSQQ QPSSVPTLLM GQHMLYDLAQ GNPGFRTSAR 120 QRWTPSQTQL QILESLFDQG HATPSKQKIK EITMELSQHG QISETNVYNW FQNRKARAKR 180 KQLPSQRGGE SENETDDEYP GEKRFKPQHD SNAQNPKSGH SEADPQVHKS DDVVQNKPCT 240 TDQKQFGIQE NDTQSLLQRE DEMRPHASLG STMLGVSGSA EHESVECLPE VKPIYS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.15419	0.0	root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024395861.1	2e-60	WUSCHEL-related homeobox 8-like isoform X2
Refseq	XP_024395862.1	2e-60	WUSCHEL-related homeobox 8-like isoform X2
Refseq	XP_024395863.1	2e-60	WUSCHEL-related homeobox 8-like isoform X2
TrEMBL	A0A2I4KAN3	0.0	A0A2I4KAN3_PINPS; WUSCHEL homeobox protein
STRING	PP1S224_106V6.1	4e-59	(Physcomitrella patens)