PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008684
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 288aa    MW: 32219.6 Da    PI: 9.6551
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-28518PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000372322691254
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R +++ +++  L++l+ +      +K + a++L +A+ YIksL
  Pta008684 232 RKEKLGDRITALQQLVSPF-----GKTDTASVLWEAIVYIKSL 269
                677888999*******998.....8*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.312220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-8230278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-10230281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.73E-5230274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
XPGHVPINSF NSRLDLPIPH FDIGRVKQEF NMSYDNPGLD APRTLVSQGF RSDPCSNEEL  60
LRILDFPLNQ PFLKGATAHG FHNATSMRGE DHHQQPHGLW PSSNTYSSRT FPAALSRLLP  120
SSPLKQPASR LLTNSRNIPL WNSMASTPEK MQQSTNSTDR ASSLQYCSPQ FLQEGKQLNN  180
TTQSLNMPRC DEARDATNDA KRSSPDSSSS DSIFKRPRLD NTNSTLPTFK VRKEKLGDRI  240
TALQQLVSPF GKTDTASVLW EAIVYIKSLH EQVQKLSMPY MNKGAVNX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.9940.0root| shoot| xylem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.27e-27bHLH family protein