PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008769
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 285aa    MW: 31333.4 Da    PI: 5.7088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-45909PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2249.7e-083884150
        AP2  1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaar 50
               s+y+G    +++g+W+A+   +   g    +++fs g+  t eeAa+a++   
  Pta008769 38 SKYRGLAKQSQTGKWEAS---F---GrvlGNRYFSMGSCSTSEEAAAAYEMSQ 84
               79****************...8...555446******************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-73898IPR016177DNA-binding domain
PfamPF008472.2E-43882IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-43989IPR001471AP2/ERF domain
SMARTSM003800.001439103IPR001471AP2/ERF domain
PROSITE profilePS5103210.4553997IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
XFPVSDYARD IEEMQSISRE DFLASLRRKS SGFSRGMSKY RGLAKQSQTG KWEASFGRVL  60
GNRYFSMGSC STSEEAAAAY EMSQGEYRGF GVVRNIDLSS YIRWWQPNKS LEVEPSATRH  120
MDESHSISEE RHTQGEEPET PQWPGQACEP YQLPSLGVPN NGKHNPSPVT ALSVLHQSSS  180
FKQMLEKASA KKGKSDQDIN ANDNPENIQL EKGKGKIFLA EDTTGSKEFA YQPSGQTSTI  240
FPFAQVQPVP PIQDCNTTAP ASDSLWTNFV PATGGVALAN AVSIC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A171PZK20.0A0A171PZK2_9SPER; WRI2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-37AP2 family protein