PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008925
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 280aa    MW: 31373.4 Da    PI: 6.1551
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-37905PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-151764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd +l+ +++ +G g+W++ +++ g+ R++k+c++rw +yl
        Pta008925 17 RGFWLPEEDMKLITYITTHGHGCWSSLSERAGLQRCGKSCRLRWMNYL 64
                     789*******************************************97 PP
2Myb_DNA-binding452.5e-1470113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++teE+  ++ + ++l ++ W+ Ia++++ gRt+ ++k++w++
        Pta008925  70 RGNFSTEEENVIISLQARLNNR-WAQIAKHLP-GRTDTEIKNYWRS 113
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-23967IPR009057Homeodomain-like
PROSITE profilePS5129414.9511264IPR017930Myb domain
SuperFamilySSF466895.47E-2715111IPR009057Homeodomain-like
SMARTSM007171.2E-111666IPR001005SANT/Myb domain
PfamPF002494.0E-131764IPR001005SANT/Myb domain
CDDcd001671.89E-102064No hitNo description
PROSITE profilePS5129422.78165119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2368118IPR009057Homeodomain-like
SMARTSM007173.9E-1369117IPR001005SANT/Myb domain
PfamPF002491.1E-1270114IPR001005SANT/Myb domain
CDDcd001675.97E-1072112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MKHHVVHNCC SKKAVKRGFW LPEEDMKLIT YITTHGHGCW SSLSERAGLQ RCGKSCRLRW  60
MNYLRPGIKR GNFSTEEENV IISLQARLNN RWAQIAKHLP GRTDTEIKNY WRSCLKKKAV  120
AAANQGASQQ PPIAMILDQI AIDDVDMDPA PEIDLYGDSG AGCSQILTPT ITPEVADWGN  180
FEQNCDQFSA NFYKATMNED LDRYGEASLD FPLVGDRNTC CSVNVANQNW QPVDSGYVSL  240
SPSPCSLLNQ RNPGESTLFD QIQAALMMLS EDFGSEIRPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.160200.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ8LPH64e-54MYB86_ARATH; Transcription factor MYB86
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.12e-58myb domain protein 103