PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008941
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 280aa    MW: 31699.3 Da    PI: 8.5675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S23008455PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.8e-1380133154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++ +hn++Er+RR+++N+ + +Lr+llP+++ + +kK+s  +i+    +YI +L
  Pta008941  80 KKLSHNANERQRRKNLNELYGKLRSLLPNSTFNMKKKVSNPAIVCGILKYIPQL 133
                6789*************************66688899**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.40279133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1080147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-1080133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-980138No hitNo description
SuperFamilySSF474592.49E-1380149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-785139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
XAQSMAMSAL PRPESFESQL LMEGCEYWRE VEYSKPPCTM LEYGEKFFLS GDNVICNSYL  60
PNITDEKGSG FNLSEEVVTK KLSHNANERQ RRKNLNELYG KLRSLLPNST FNMKKKVSNP  120
AIVCGILKYI PQLRRQIKIL SRQRDELLTL RRTSGQEVKT APAEYHASEM LIDKLDFNQS  180
PNALLSEVCI FAGKHVLLVT VQTAHGAPPV FSKLLLLFEE EKLDVMNAST FISGVKAWHS  240
IQVKAMESSG RFDTSALRLK IILLCEQSGG HFSQQALHYF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.195650.0root
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-17bHLH family protein