PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta008955

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

bZIP

Protein Properties

Length: 279aa MW: 29297 Da PI: 9.9023

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-112482553	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.9	3.5e-16	189	242	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe +v +L++eN++Lkk+ e+ + +k Pta008955 189 RRQRRMIKNRESAARSRARKQAYTVELEAEVNQLKEENTKLKKQQAEMAERXQK 242 79****************************************998888877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.9E-15	182	242	No hit	No description
SMART	SM00338	4.9E-16	185	249	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.53	187	242	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.75E-11	189	238	No hit	No description
CDD	cd14707	1.36E-26	189	236	No hit	No description
Pfam	PF00170	9.4E-14	189	242	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	192	207	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
XTFSVSTNVL PNHAAMDMVN LDAFKHQQQQ TDWLNNHYRN ATAAAFAQQQ HQQHQQQQQQ 60 QLLHHQAAAE AAAAAAAYAT NVNRAGGNAT LIGQGGLGGG LALGGTMGNG GLGAGLGGVG 120 GLGAGLGGGF GPSALAIGAG SPTSPLSSDG VGPSHVDNPT ISPVPYGMDG GMRGRKRGLE 180 GPVEKVVERR QRRMIKNRES AARSRARKQA YTVELEAEVN QLKEENTKLK KQQAEMAERX 240 QKADSGGDGP RGKTVGNQNK SSEENTDWAM VKADVQWHI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.13535	0.0	needle\| root\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and siliques but not in seeds. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9M7Q4	4e-39	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
STRING	Aquca_072_00142.1	3e-39	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	2e-32	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]