PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008978
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 279aa    MW: 31251.5 Da    PI: 9.9296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S17046663PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15104150455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h  +Er+RR+++N++f  Lr+l+P       +K++Ka+iL  A+eY+k+Lq
  Pta008978 104 SHVLAERKRREKLNEKFIVLRSLVPFV-----TKMDKASILGDAIEYLKQLQ 150
                8999**********************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.606100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-20101167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.66E-15103154No hitNo description
PfamPF000103.4E-13104150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-20104170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-19106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
XERQQASNLT ESTGFISTKL GKDWRSRHSK QGSGFIHWKN NGNCVVGIKA VASPQRILKK  60
VLFNLARLHN KCKEDPGYSP KLGEEEIGSK LVGRKIGQED LSVSHVLAER KRREKLNEKF  120
IVLRSLVPFV TKMDKASILG DAIEYLKQLQ RRVEELEASS KLMEAEIKKT QNRNLPKRSG  180
STENMRMSRH GVNHVDSCLQ SSCLDGELGW TLTDTKQPPS KMPRLESKRK LNDFHKKGSC  240
TLAAAAADLD VSVSVIEDDA VLVEIQCPCK HGVLLDIMX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1496168177Transcription factor MYC2
5gnj_B1e-1496168177Transcription factor MYC2
5gnj_E1e-1496168177Transcription factor MYC2
5gnj_F1e-1496168177Transcription factor MYC2
5gnj_G1e-1496168177Transcription factor MYC2
5gnj_I1e-1496168177Transcription factor MYC2
5gnj_M1e-1496168177Transcription factor MYC2
5gnj_N1e-1496168177Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113ERKRRE
2109114RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.172790.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9641e-176A0A167V964_PICAB; Transcription factor bHLH-2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.18e-27bHLH family protein