PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta009016

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Whirly

Protein Properties

Length: 277aa MW: 30930.5 Da PI: 9.8155

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-26070	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	133.7	9.2e-42	99	236	2	139
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101 v+k +al + +++p++ +l+ g ++l ++G ++le+++a+++r+ydW+kk++ als+ ev++l++++++escef hd++ ++s++Gkv k+lkv l d Pta009016 99 VFKDEGALGMRPKLPDYITLKMGGVTLAKEGCMFLEFTPAVGPRQYDWSKKKVIALSVVEVGKLLSIGPNESCEFTHDTFLGKSEAGKVLKVLKVGNLQD 198 9************************************************************************************************* PP Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 + +++svt ++ +++ ++s+P++ +ef+v++s ++ Pta009016 199 TEEYSFEFSVTDKIANADLRLSIPITTGEFSVMQSSFN 236 *******************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	2.3E-63	87	258	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	7.85E-53	91	259	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	4.4E-44	99	233	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
GPNTVKNPTR FDHLQQKKKK MLKLKGLGTQ ILRGAATRRL QPLCTPFSSS HWYSKVVKAS 60 SNDELSETSS LSSSLGHYAP TQPDFLRRQT DKIYVKHTVF KDEGALGMRP KLPDYITLKM 120 GGVTLAKEGC MFLEFTPAVG PRQYDWSKKK VIALSVVEVG KLLSIGPNES CEFTHDTFLG 180 KSEAGKVLKV LKVGNLQDTE EYSFEFSVTD KIANADLRLS IPITTGEFSV MQSSFNFILP 240 YLMGWHAYTD STKSNESGHF MSGSHVIAKR PDLEWGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4koo_A	8e-58	92	254	8	170	Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_B	8e-58	92	254	8	170	Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_C	8e-58	92	254	8	170	Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_D	8e-58	92	254	8	170	Single-stranded DNA-binding protein WHY1, chloroplastic
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.622	0.0	root\| shoot\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NLD1	1e-151	A9NLD1_PICSI; Uncharacterized protein