PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta009022

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

bZIP

Protein Properties

Length: 277aa MW: 29977.2 Da PI: 6.7214

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-42530	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.5e-10	83	131	3	51
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++k +r NReA r++R++Kka+++ Lee v +L++ N++L +l+ Pta009022 83 SSKPKKRPVGNREAVRKYREKKKARTASLEEQVVQLTTVNQQLHRRLQG 131 5678899999**********************************99874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-14	80	148	No hit	No description
SMART	SM00338	1.9E-9	81	148	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	5.5E-15	83	138	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.887	83	130	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.19E-7	85	131	No hit	No description
CDD	cd14686	3.24E-11	87	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MDDGDINFSS NIVDDFGNGS SMESFFEEIL RDTTHACTHT HTCNPPGPDN THTHTCFHTH 60 TKILAAPDDE KSADTAESPQ NSSSKPKKRP VGNREAVRKY REKKKARTAS LEEQVVQLTT 120 VNQQLHRRLQ GQAALEAEIA RLKCLLADFR GRIDGELGSY PYQRSIRMDK TCNDAPFRQP 180 MPGGYVLDPC NIWCNADAAC RDPTLASNSE GGVQHEHDSA ARWNGDCGQI AGHCQGLKGD 240 MAVTSSGLSG CSEGTATKTV PAAVASSGKE RKGAFGV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.1718	1e-143	embryo\| root\| shoot\| xylem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012081778.1	5e-85	basic leucine zipper 23 isoform X2
Refseq	XP_020538023.1	5e-85	basic leucine zipper 23 isoform X2
Swissprot	Q8GTS2	3e-74	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A0D6R0G4	1e-109	A0A0D6R0G4_ARACU; Uncharacterized protein
STRING	XP_002534148.1	2e-83	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-49	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]