PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta009203

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

WRKY

Protein Properties

Length: 271aa MW: 30647.4 Da PI: 5.9888

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-1615	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	52.4	1.1e-16	219	256	21	58
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +sYYrCt+++C+vkk+ver +ed ++v++tY g+H+h Pta009203 219 VKSYYRCTHNNCRVKKRVERLSEDCRMVITTYGGRHTH 256 68************************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.5E-17	168	256	IPR003657	WRKY domain
SMART	SM00774	1.4E-8	183	258	IPR003657	WRKY domain
SuperFamily	SSF118290	6.02E-12	217	256	IPR003657	WRKY domain
PROSITE profile	PS50811	14.757	220	256	IPR003657	WRKY domain
Pfam	PF03106	3.7E-11	220	256	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MELXDEANPN PLRTAALTTF MEQQPMRVFQ QLQLNTFPSY QLPSNEVLPT MAQLEPPRGF 60 ISRADHHLNH SVSGCFNDKD DQFLMDEGSH LEAGGGYSHD DVQYASLPEC GLISSSSIQN 120 SNYTHDNFAG CTHQSASNTG NISPAARWEG SSSWPSEKVK VKVKRKLREP RFCFQTRSDV 180 DVLDDGYKXE KIWTESGEEQ PPSQVMTVVG GESASWSLVK SYYRCTHNNC RVKKRVERLS 240 EDCRMVITTY GGRHTHLPCD DTESNNKDYF K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	167	KVKRKLR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.14047	1e-173	root\| xylem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q93WY4	6e-40	WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBL	A0A061DUM5	6e-42	A0A061DUM5_THECC; WRKY family transcription factor
STRING	EOX96509	9e-43	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	1e-36	WRKY family protein

Publications ? help Back to Top
Yu Y, et al. MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] Yang L, et al. PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Han Y, et al. WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]