PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta009508
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 262aa    MW: 29989.4 Da    PI: 9.768
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-62862PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.4e-29170228259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ +++++p+sYYrC++a +Cpvkk+v+r+a+dp+++++tYe+eH+h+
  Pta009508 170 SDGCRWRKYGQKSTRNNPCPKSYYRCATApSCPVKKQVQRCAQDPTIIITTYEDEHTHS 228
                7*************************8888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-31155228IPR003657WRKY domain
SuperFamilySSF1182907.06E-26161229IPR003657WRKY domain
PROSITE profilePS5081126.429164230IPR003657WRKY domain
SMARTSM007747.3E-33169229IPR003657WRKY domain
PfamPF031061.9E-24171227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEAHKKKMTL LVTEINRMAE ENRKLNSLLR RMITNYDDLL KQTKRIDGSQ IFSPENRSED  60
NFNFRILSRR SDNSDSTTAV SHHPSDSHEQ VGDKDGKNTR FMDDQQRPSH KRKINHLQLD  120
QFQNGLINPS MEESPTKKHQ GLSNDSFEHT APVTKKIVSV RTKSEASVIS DGCRWRKYGQ  180
KSTRNNPCPK SYYRCATAPS CPVKKQVQRC AQDPTIIITT YEDEHTHSLS PLAIAAMRPG  240
LSNHLVGREM NTENFVTGNQ FX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21158231375WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK96e-80A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.19e-35WRKY family protein