PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta009567
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 260aa    MW: 29357.1 Da    PI: 8.7367
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-7013PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+ Ed +l ++++++G+g W+  +++ g++R++k+c++rw +yl
        Pta009567 14 RGTWTEKEDMILSEYIRLHGNGGWRNLPQKAGLKRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding45.51.8e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +++E++l+v+  ++lG++ W++Ia +++ gRt++++k++w++
        Pta009567  67 RGNISPDEEDLIVRMRRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.43961IPR017930Myb domain
SuperFamilySSF466891.25E-2611108IPR009057Homeodomain-like
SMARTSM007172.2E-111363IPR001005SANT/Myb domain
PfamPF002496.2E-141461IPR001005SANT/Myb domain
CDDcd001677.85E-91661No hitNo description
PROSITE profilePS5129422.05762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2265115IPR009057Homeodomain-like
SMARTSM007174.2E-1466114IPR001005SANT/Myb domain
PfamPF002498.9E-1367110IPR001005SANT/Myb domain
CDDcd001671.88E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRSPCCSKQ GLNRGTWTEK EDMILSEYIR LHGNGGWRNL PQKAGLKRCG KSCRLRWTNY  60
LRPDIKRGNI SPDEEDLIVR MRRLLGNRWS LIAGRLPGRT DNEIKNYWNT RLSKKPLSVN  120
DPQPKSSAQN LRTSSKSPPL HNQGFKTTPV KTTAVRYSEI VRSNRCNAYG RSDCSSDKTF  180
TLSIVKENPN AITHDASQHI AFGMADVNLL ETEAGNSTCS VWSLEEERSP DFDYFAEDTA  240
TFAESLLELN ELLSPDSCLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-221211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499327.11e-70PREDICTED: transcription factor MYB32-like isoform X2
TrEMBLA0A167V9011e-107A0A167V901_PICAB; Transcription factor MYB30
STRINGPOPTR_0006s23840.12e-69(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.17e-61myb domain protein 6