PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta009571

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NF-YC

Protein Properties

Length: 260aa MW: 29027.6 Da PI: 6.9988

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-95882551	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	144.6	2.3e-45	73	173	4	101
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 w++q ie+a +f+nh++Plarikki+k+de+v+misaeaPv+++kace+fi eltlr+w h+ e+krrtl+k+di +a++ +d+fdfl+d+ prd+ Pta009571 73 ICWANQlqgIEEAVEFRNHSFPLARIKKIMKSDEHVRMISAEAPVVFAKACEMFINELTLRAWSHTGETKRRTLQKNDIVEAINGADMFDFLIDNFPRDD 172 5799998889****************************************************************************************98 PP NF-YC 101 l 101 l Pta009571 173 L 173 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.54E-28	61	164	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.8E-34	85	155	IPR009072	Histone-fold
Pfam	PF00808	5.5E-22	92	155	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MDQQSWRQHM AVQNCGANAT FFQSPQILPT IPHGMFQQPP TSSNAHASAL SLSAHHNQLG 60 YHHQKQQQQE VEICWANQLQ GIEEAVEFRN HSFPLARIKK IMKSDEHVRM ISAEAPVVFA 120 KACEMFINEL TLRAWSHTGE TKRRTLQKND IVEAINGADM FDFLIDNFPR DDLKEDQLTN 180 LATPASSISV GSCSSNAGGV NSFPYYYLPN HHSAPHGVIV GKPVDPAIYM QQSGASVGYV 240 QNMLQRGFMY TEKSRSPNSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-44	77	170	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	148	RRTLQKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.15958	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002284851.1	4e-62	PREDICTED: nuclear transcription factor Y subunit C-9 isoform X5
Refseq	XP_010659832.1	4e-62	PREDICTED: nuclear transcription factor Y subunit C-9 isoform X4
Refseq	XP_010659833.1	4e-62	PREDICTED: nuclear transcription factor Y subunit C-9 isoform X5
Swissprot	Q8LCG7	3e-53	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A9NTJ8	8e-96	A9NTJ8_PICSI; Uncharacterized protein
STRING	VIT_14s0128g00250.t01	1e-61	(Vitis vinifera)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]