PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta009629

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

LBD

Protein Properties

Length: 258aa MW: 28073.2 Da PI: 6.711

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-5732	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	46.1	1.4e-14	26	102	23	95
DUF260 23 paeqpkkfanvhklFGasnvlkllkalpeeer....edamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 p++q++++a+++k++G++ +++l+ + pe+ r +++ssl+y A+ r+ dP+ G+vg++ +++++++q+ +e Pta009629 26 PESQANATAFLAKFYGRTGLMNLICNGPEHLRpvigAAMFSSLLYDACGRMLDPIFGSVGLVGSGNWEVCQAGVESI 102 899***************************88878899*****************************988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	3.3E-9	26	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MAVESSERAA ANPAFSGPAS NGXRSPESQA NATAFLAKFY GRTGLMNLIC NGPEHLRPVI 60 GAAMFSSLLY DACGRMLDPI FGSVGLVGSG NWEVCQAGVE SILRGNSASH VVPMEAMAGD 120 LHRVKTKDRF KHVSRAKPRQ KQRKSALLNN HIVSRSKSDG WCDVTNSLQG AAPENGKSNT 180 EQERNEFVTA DEAEMKYSHD LIWNLETSHP EAEAPFDAVK LELTLGYEGS TSPTRILLAD 240 NLRCSETHSS QCTERYLP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.18998	0.0	root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3G6J9E0	3e-37	A0A3G6J9E0_PINTA; ASYMMETRIC LEAVES 2-like protein 37