PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta009724

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

HSF

Protein Properties

Length: 255aa MW: 28301.9 Da PI: 9.1331

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-52510	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	105.4	4.6e-33	47	139	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d+++++++sw +n+n++vv+ ++ef+ +Lp+yF h+nf+SFvRQLn+YgF+k+ + + eF+++ F+kg+++ll++i+ Pta009724 47 FLVKTYRLVDDPSTDHIVSWGDNNNTIVVWRPKEFSAILLPTYFNHTNFSSFVRQLNTYGFRKIVRGR---------CEFANQLFRKGQQHLLSHIQ 134 9*************************************************************9988.........67************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + Pta009724 135 RRKPS 139 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.3E-50	43	136	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.28E-32	45	136	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.7E-35	45	136	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	8.4E-29	47	136	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	47	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	85	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	98	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
XCYLTVRLTL QIFLQSSAVD KEAANAGTLL MGGNGVSDAV RLVAAPFLVK TYRLVDDPST 60 DHIVSWGDNN NTIVVWRPKE FSAILLPTYF NHTNFSSFVR QLNTYGFRKI VRGRCEFANQ 120 LFRKGQQHLL SHIQRRKPSS TSTAKVSQMQ YDKSSSLIPN TSSTVQDSQV PAADLSLADL 180 NEILRNSSVL LSEIARLQNI CGRNIMLSIP DNTRNPPPID MDRSKTDNPS TSSSMTDVAE 240 EVSMSPPKLF GVPLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-20	47	136	29	129	Heat shock factor protein 1
5d5v_B	2e-20	47	136	29	129	Heat shock factor protein 1
5d5v_D	2e-20	47	136	29	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q7XHZ0	1e-45	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	H9WK88	1e-71	H9WK88_PINTA; Uncharacterized protein (Fragment)
STRING	GSMUA_Achr9P15370_001	5e-50	(Musa acuminata)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]