PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta009759
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 254aa    MW: 28723.5 Da    PI: 7.8527
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-9559PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-174087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++++k +G g+W++ ++  g+ R++k+c++rw +yl
        Pta009759 40 KGAWTKEEDDRLIQYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 87
                     79******************************99************97 PP
2Myb_DNA-binding54.33.1e-1793139148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++Ed+l+++++++lG+++W++Ia +++ gRt++++k++w+++l
        Pta009759  93 RGFFSEDEDDLILKLHALLGNNRWSLIAGRLP-GRTDNEIKNYWNSHL 139
                      789*****************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-223190IPR009057Homeodomain-like
PROSITE profilePS5129417.5913587IPR017930Myb domain
SuperFamilySSF466897.05E-2838135IPR009057Homeodomain-like
SMARTSM007177.3E-143989IPR001005SANT/Myb domain
PfamPF002491.1E-154087IPR001005SANT/Myb domain
CDDcd001671.59E-114287No hitNo description
PROSITE profilePS5129427.38688143IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2691144IPR009057Homeodomain-like
SMARTSM007172.2E-1692141IPR001005SANT/Myb domain
PfamPF002493.3E-1594139IPR001005SANT/Myb domain
CDDcd001672.54E-1496139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
LHRFLFCNPV ITSLHLPFLF SDNLLNMGRA PCCSNGDRNK GAWTKEEDDR LIQYIKVHGE  60
GCWRSLPKAA GLLRCGKSCR LRWINYLRPD LKRGFFSEDE DDLILKLHAL LGNNRWSLIA  120
GRLPGRTDNE IKNYWNSHLK RKLISMGIDP LTHRPFQKTS HHHPSPPQNV REAETTPSIG  180
IVQDFFRCPS ELSTKSEQIS DAASGLAQDE QPHPNLNLNL NLELSIARSS VHGVAEKEDV  240
VNSQQGESDL SEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-273514322128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.23640.0root| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431803.12e-83PREDICTED: transcription repressor MYB4-like
SwissprotQ9SZP18e-82MYB4_ARATH; Transcription repressor MYB4
TrEMBLA9NTK01e-123A9NTK0_PICSI; Uncharacterized protein
STRINGXP_010431803.18e-83(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-82myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]