PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta009772

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

LBD

Protein Properties

Length: 253aa MW: 27859.7 Da PI: 8.3624

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-120782553	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	49.4	1.3e-15	26	92	23	89
DUF260 23 paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +++q++++ +++k++G++ +++l+++ p++ r+++++sl+yeA+ r+ +Pv+G++g++ ++++ ++ Pta009772 26 AESQANATIFLAKFYGRAGLMNLISNGPDNLRPAIFRSLLYEACGRVVNPVSGSIGLLCSGNWAVRL 92 4678999********************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.344	1	104	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.2E-12	27	92	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MAAECSERDA PNHAFSGRAS SGXRTAESQA NATIFLAKFY GRAGLMNLIS NGPDNLRPAI 60 FRSLLYEACG RVVNPVSGSI GLLCSGNWAV RLQAGVESIL RGNWKPQTPV ETMAARKLQK 120 SVKTRQRSKG FSHSKSKRNE GERGPVSDHV ESSSKSDYCG DVANVSQKTS GNGDFDERYV 180 DKYSMFSTAR EQEEFACVDQ AQMQYCHDLS NPKTSETETS FNAVELELTL GSKVSFRRTP 240 DKISSSEWWP SSQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.12761	0.0	root\| shoot\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263769.1	3e-41	PREDICTED: LOB domain-containing protein 41-like
TrEMBL	A0A1U8AE09	8e-40	A0A1U8AE09_NELNU; LOB domain-containing protein 41-like
STRING	XP_010263769.1	1e-40	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	6e-40	LOB domain-containing protein 40