PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta009809
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family G2-like
Protein Properties Length: 252aa    MW: 27889.6 Da    PI: 8.1643
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-34564PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.27.5e-3360115156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k+r++W+peLH++Fv+a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Pta009809  60 KARRCWSPELHRKFVNALQQLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 115
                68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.19E-1857118IPR009057Homeodomain-like
PROSITE profilePS5129414.00657117IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-3057118IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-2760115IPR006447Myb domain, plants
PfamPF002496.4E-862113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
XLGLSSAEPE ETRHHGGLNN NKRCINEEGD QNEGCIVPCN RNMSSTDSHT PQQLGQTQRK  60
ARRCWSPELH RKFVNALQQL GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRLP  120
SSGCPQAMGT VTQAPQLVVL GGIWVPPEYA THHGHAAPEL YTALPNIASQ SHAARYYRQR  180
QPAIDGNSLQ EFCTSYSRNH VESSSQPQSD GSPQSSSSMS MEADQDGKSG SQSFHGSWKE  240
KEMGNFVRAP QL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-1560113154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1560113154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1560113154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1560113154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049950.19e-52PREDICTED: myb family transcription factor EFM isoform X2
TrEMBLA0A059CX252e-50A0A059CX25_EUCGR; Uncharacterized protein
STRINGevm.model.supercontig_127.551e-50(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-47G2-like family protein