PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta009818

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

WRKY

Protein Properties

Length: 252aa MW: 27905.9 Da PI: 10.0837

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-72829	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.1	1.4e-31	82	139	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt + +vkk+vers+edp +v++tYeg+H h+ Pta009818 82 EDGYRWRKYGQKAVKNSPFPRSYYRCTNGKSSVKKRVERSSEDPGIVITTYEGQHSHP 139 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.6E-33	66	141	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-27	73	141	IPR003657	WRKY domain
PROSITE profile	PS50811	30.044	76	141	IPR003657	WRKY domain
SMART	SM00774	3.5E-35	81	140	IPR003657	WRKY domain
Pfam	PF03106	7.6E-25	82	139	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
XSSSSSEGHE LEQSSLVAPS SVTTNSTAAK GQGPADTESQ PDLTAVEKPS MEPKKPPRKK 60 GQKRNREPRF AFMTKSDVDH LEDGYRWRKY GQKAVKNSPF PRSYYRCTNG KSSVKKRVER 120 SSEDPGIVIT TYEGQHSHPS PAILRGSAES QSHFSDQRLN SPFTQTPLIR FPPHPMMMSS 180 TNQVPAASPS STNNFHHLGS IKSCMNPHLL PQSHHGNSQP HSTHLMPTNL SQQPLIDQGL 240 LEDIVPPGMR KF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-26	71	142	7	78	Probable WRKY transcription factor 4
2lex_A	5e-26	71	142	7	78	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.16829	0.0	root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007157586.1	6e-58	hypothetical protein PHAVU_002G081600g
TrEMBL	A0A0C9QSF7	1e-72	A0A0C9QSF7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11890_2869 transcribed RNA sequence
TrEMBL	A0A0D6QVU5	1e-72	A0A0D6QVU5_ARACU; Uncharacterized protein
STRING	XP_007157586.1	2e-57	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	3e-39	WRKY DNA-binding protein 71