PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta009829
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 252aa    MW: 27909.4 Da    PI: 10.1532
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25803480PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.8e-152775254
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
               +y GVr +k +gr++AeIrdp     r  +++lg+++ta+eAa+ +++a+k l+
  Pta009829 27 HYIGVRKRK-WGRYAAEIRDPL----RkCSVWLGTWDTADEAAREYDRAAKVLK 75
               599***999.**********72....45**********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.35E-222784No hitNo description
Gene3DG3DSA:3.30.730.102.9E-242785IPR001471AP2/ERF domain
PfamPF008471.1E-92775IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-172785IPR016177DNA-binding domain
SMARTSM003802.9E-232790IPR001471AP2/ERF domain
PROSITE profilePS5103219.2562784IPR001471AP2/ERF domain
PRINTSPR003672.0E-62839IPR001471AP2/ERF domain
PRINTSPR003672.0E-65066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAPRDLEGDG SKKSVKDGNA NAPKEIHYIG VRKRKWGRYA AEIRDPLRKC SVWLGTWDTA  60
DEAAREYDRA AKVLKAPNAK INFPSPNNLR CRTQSRSAAH DNWTAIHPVS TSATTTSVPV  120
PPFIPEVWHL NIYNKINNKV LTRSVKPEKK KPWTHPYLNV GAGMQKVGNE NVRTNNSNEN  180
PHYSPSFSIN FVDSGADLLQ QPPVAVTLFG RIVGTQINTH QGHEFVGAAS GPKNLLHATS  240
YCDFSSTSRA VE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1528891577Ethylene-responsive transcription factor ERF096
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-18ERF domain protein 12