PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta009835
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 251aa    MW: 28986.6 Da    PI: 9.2517
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S17044283PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-32082551PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix773e-2446125286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                Wt+ e+l+Li++r eme r+ r+ +k  lWee+++++r++ + r +++C++kwe+l   yk++++g+++r     + +p+fd+l+
  Pta009835  46 WTRAETLKLIRLRAEMEPRFARSGRKSELWEEIAEALRRESVVRDAQRCRDKWEKLTASYKEVRDGQRDR-----QDFPFFDELD 125
                ********************************************************************96.....568****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.15338102IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.5E-541102IPR009057Homeodomain-like
SMARTSM007173.9E-442104IPR001005SANT/Myb domain
CDDcd122034.01E-2344109No hitNo description
PfamPF138377.0E-2044126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
XQKRSHPLAE VVMPISVRPL AEKCGVEAEE ERKRAAEHKK QRSKNWTRAE TLKLIRLRAE  60
MEPRFARSGR KSELWEEIAE ALRRESVVRD AQRCRDKWEK LTASYKEVRD GQRDRQDFPF  120
FDELDPLLSL KPQKAAAAAA AAATAATAAN FVSAETPSNF PTDDEMTEEG SPAGKRRKTT  180
PRGLSATDLD AVRELLESLV SRQQRFFVDL LDSMERKEEI RERIRQEKEE KWRAEERAQR  240
CLFNNTMIIL A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13844KKQRSKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.60510.0embryo| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395857.16e-77trihelix transcription factor GTL1-like
TrEMBLA9NRE11e-136A9NRE1_PICSI; Uncharacterized protein
STRINGPP1S224_109V6.12e-76(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.18e-17GT-2-like 1