PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta009873

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

C3H

Protein Properties

Length: 250aa MW: 27563.7 Da PI: 6.8584

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-44592	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.9	1.5e-07	35	59	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+ C+ f+ C+yGdrC+F H+ Pta009873 35 KTRHCKKFYTDEGCPYGDRCNFVHD 59 8999********************7 PP
2	zf-CCCH	44	3.7e-14	101	126	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++Gd+C+FaHg Pta009873 101 WKTRICNKWETTGHCPFGDKCHFAHG 126 8************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	6.5E-10	32	60	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-7	33	60	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.272	33	61	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-4	35	59	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1	35	60	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-18	96	131	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-10	97	131	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-9	100	127	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.145	100	128	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.1E-11	101	126	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
XQEEDRAQRA ERRGENQIPC VSSSGAGSDS QRFHKTRHCK KFYTDEGCPY GDRCNFVHDD 60 QSRSREYVAI SLAPTPTPGN GNGTGNGNNG GNGSFQRPSN WKTRICNKWE TTGHCPFGDK 120 CHFAHGLAEL QKYGGGLLDG ENGDISGGLR NDLKQNGTLP KPHVDAGAGP SSSVYNTDNY 180 VIGASNQRSM GNFISQRQGQ RILPKWKGPD KISRIYGDWI EENEWEFTSR STASQIEKVS 240 QAEEETLNEG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020519258.1	1e-79	zinc finger CCCH domain-containing protein 56
Swissprot	Q84UQ3	4e-65	C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBL	A0A0D6R4Y8	4e-94	A0A0D6R4Y8_ARACU; Uncharacterized protein
STRING	ERN00260	5e-79	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	4e-51	C3H family protein