PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta009882
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ZF-HD
Protein Properties Length: 250aa    MW: 27429.8 Da    PI: 8.5005
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-90982548PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.78.8e-3156107359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                   +rY+eC++NhAa++Ggha+DGCgEfmp+e      ++lkCaACgCHRnFHRreve 
    Pta009882  56 VLRYRECQRNHAANIGGHALDGCGEFMPAE-----DDTLKCAACGCHRNFHRREVEG 107
                  679*************************93.....468****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-1848117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.9E-2657105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.8E-2658105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.36459104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.9E-30174249IPR009057Homeodomain-like
SuperFamilySSF466891.54E-18175248IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-24187243IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSAPYGVYPS GNGNGNAAII MVLPHDESSS NPLNPQNPIN PRNPMEAASA PLATKVLRYR  60
ECQRNHAANI GGHALDGCGE FMPAEDDTLK CAACGCHRNF HRREVEGDEQ PPSNCECCLR  120
KKRGGGSSSG PGSPTAPYYP LPLPHGSSAP HMLMALSSGL TESDDPDGNT HNNSNNNLSH  180
HHHRGMKKRF RTKFSQDQKE KMHLFAEKMG WRMQKQDEAI VQQFCNEIGV GKGVLKVWMH  240
NNKHTLGKKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-221882451875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.134630.0embryo| root| shoot| xylem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, inflorescences, open flowers and seeds. Detected in stems and seedlings. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827241.12e-62zinc-finger homeodomain protein 2
RefseqXP_010257380.11e-61PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9SEZ11e-50ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA9NWR91e-144A9NWR9_PICSI; Uncharacterized protein
STRINGERM944781e-61(Amborella trichopoda)
STRINGXP_010257380.15e-61(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-50zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]