PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta009908

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NF-YA

Protein Properties

Length: 249aa MW: 27432.9 Da PI: 9.8109

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-75	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.3	4.6e-32	149	205	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++Il+RRq+Rak+e +kl +k+rkpylheSRh hA+rR+Rg+gGrF Pta009908 149 DEPVYVNAKQYRGILRRRQSRAKAELGNKL-IKARKPYLHESRHLHAMRRARGCGGRF 205 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.8E-36	147	208	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.292	148	208	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.4E-27	150	205	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.1E-23	151	173	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	153	173	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.1E-23	182	205	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MANAGSYNLL TACFVDRSNA LDASLKEAAA QSQQLQVLAQ LQQPGSGGVN KGMTRMQLSP 60 TKSGYGVTIA NGQHHQPHVA STLHSTSPEY HVPRTQLELG HTIAHVTYPC TDPYFGTIVD 120 AYGDHVMNHP QILGFHQGRM PLPSDVIEDE PVYVNAKQYR GILRRRQSRA KAELGNKLIK 180 ARKPYLHESR HLHAMRRARG CGGRFLNTKL LETKKVNTDD GKLTDGQHAQ TVSSSSTEAV 240 QSENRNMNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-18	149	209	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024380415.1	2e-64	nuclear transcription factor Y subunit A-7-like
Refseq	XP_024380416.1	2e-64	nuclear transcription factor Y subunit A-7-like
TrEMBL	A0A0D6QWS4	1e-82	A0A0D6QWS4_ARACU; Uncharacterized protein
STRING	PP1S42_174V6.1	9e-64	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-40	nuclear factor Y, subunit A7