PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta009918

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 249aa MW: 28534.5 Da PI: 8.8599

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26642034	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.2	1.1e-42	20	146	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 pGfrF Pt+eelv +yLk++v+g + l+++ +i+++d+y+++Pw+Lp + + +e++w+fF++r++k+ r++r t sgyWkatg+d+++ ++ + Pta009918 20 IPGFRFYPTEEELVGFYLKNRVQGGHqLNFDIIIPTLDMYQYDPWELPgLANDVGERQWFFFVPRESKKC--ARPTRLTVSGYWKATGSDRAIRNELLQC 117 69*******************9985666556***********555566999****99875..7******************99999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfykgrap g++++W+m+eyr+ Pta009918 118 IGLKKTLVFYKGRAPLGKRSEWIMNEYRM 146 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-45	11	168	IPR003441	NAC domain
PROSITE profile	PS51005	50.24	19	168	IPR003441	NAC domain
Pfam	PF02365	6.4E-24	21	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MAVLEEMYND GAVKGELTVI PGFRFYPTEE ELVGFYLKNR VQGGHQLNFD IIIPTLDMYQ 60 YDPWELPGLA NDVGERQWFF FVPRESKKCA RPTRLTVSGY WKATGSDRAI RNELLQCIGL 120 KKTLVFYKGR APLGKRSEWI MNEYRMPDLT SSLPKKKMDM VVCRIYRKAA SQKLMEQRAK 180 PDRFEKENLV ALAGNECEEK NFHSINLACS SQSIPMADAK VPPSNYNGNE KGVSYSNVPK 240 MYNEASQLX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-40	16	171	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-40	16	171	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-40	16	171	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-40	16	171	14	168	NO APICAL MERISTEM PROTEIN
4dul_A	4e-40	16	171	14	168	NAC domain-containing protein 19
4dul_B	4e-40	16	171	14	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791987.1	1e-61	NAC domain-containing protein 22-like
Swissprot	Q10S65	4e-57	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A075M5N5	9e-97	A0A075M5N5_9SPER; NAC domain protein
STRING	XP_008791987.1	4e-61	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-59	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]