PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta009970
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 247aa    MW: 28350.1 Da    PI: 9.5431
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-7144PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.22.8e-20150228285
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                W++ evl+Li++r em+ r+ +++++++lWee ++ + ++g++r  kqC+ekw++l   yk + +g++++  ++    +yf +l
  Pta009970 150 WKRGEVLQLIKLRGEMDGRFANSARRAALWEELADMLGRQGVKRDGKQCREKWDKLMAAYKDVIDGKREE--GD---LSYFVEL 228
                *****************************************************************99984..33...4566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.153142206IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.9E-5143206IPR009057Homeodomain-like
PfamPF138371.8E-16148230No hitNo description
CDDcd122035.04E-21148212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
XLGISGREMY ENRDTDEDDE DLLLEKPYFK KRKRCGKYVP VADIEAVKTL LEAVITRQQR  60
FFKELLDSLE RKEQMREQLR QEREDKWRAE ERAHRNVFNN AMILLAQKLL GERGAAAVET  120
AMVNSAAGAV VSASDTLRQG SGPKKRSKNW KRGEVLQLIK LRGEMDGRFA NSARRAALWE  180
ELADMLGRQG VKRDGKQCRE KWDKLMAAYK DVIDGKREEG DLSYFVELRA IVGGRPDEGK  240
VQIESMP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395857.18e-85trihelix transcription factor GTL1-like
TrEMBLA0A0D6QU721e-107A0A0D6QU72_ARACU; Uncharacterized protein
STRINGPP1S224_109V6.13e-84(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.12e-12Trihelix family protein