PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta010037

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

MYB

Protein Properties

Length: 245aa MW: 27954.1 Da PI: 10.1478

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26641584	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.7	8.2e-16	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW eEd ll+ +vk++G++ W++I+++m+ + R +k+c +rw +yl Pta010037 4 RQRWRSEEDSLLLSYVKRYGPREWNLISERMNraLDRDPKSCAERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	28.6	3.4e-09	59	104	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+ +++E+ l + + +++G++ Wk+Ia+ ++ g t+k + +w y+ Pta010037 59 KGSLSEDEQRLVISLQAKYGNR-WKKIAAQVP-GTTAKRLSKWWEVYR 104 57789***************.*****.*****99998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.091	1	57	IPR017930	Myb domain
SMART	SM00717	1.5E-12	3	55	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.81E-20	4	100	IPR009057	Homeodomain-like
CDD	cd00167	3.28E-10	6	53	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.1E-20	6	60	IPR009057	Homeodomain-like
Pfam	PF13921	2.6E-15	7	68	No hit	No description
SMART	SM00717	2.3E-7	58	106	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	15.35	58	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-13	61	104	IPR009057	Homeodomain-like
CDD	cd00167	8.51E-6	63	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MKERQRWRSE EDSLLLSYVK RYGPREWNLI SERMNRALDR DPKSCAERWK NYLKPGIKKG 60 SLSEDEQRLV ISLQAKYGNR WKKIAAQVPG TTAKRLSKWW EVYREKQDKI KDRNERTIAD 120 SATKIEEGKY DHILETFAEK YMQKQKQLAT SSGCNLPTIA AMPSGLPPPI SFSMPTSSTP 180 DFIHFAIPSA STPTTCSFGA LTPCPPPWMS NSQIQLMARG LNPFFILPLI KVQPSSSSSL 240 LYSFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-17	7	100	10	100	B-MYB
1gv2_A	6e-17	7	100	7	97	MYB PROTO-ONCOGENE PROTEIN
1mse_C	5e-17	7	100	7	97	C-Myb DNA-Binding Domain
1msf_C	5e-17	7	100	7	97	C-Myb DNA-Binding Domain
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in lateral organ promordia. {ECO:0000269\|PubMed:10102816, ECO:0000269\|PubMed:16243907}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269\|PubMed:10102816, ECO:0000269\|PubMed:12750468, ECO:0000269\|PubMed:9655808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008387764.2	4e-72	transcription factor AS1
Refseq	XP_028945423.1	4e-72	transcription factor AS1
Swissprot	Q9S7B2	1e-61	RS2_MAIZE; Protein rough sheath 2
TrEMBL	I6LJ18	2e-72	I6LJ18_9LAMI; Phantastica
STRING	XP_008387764.1	2e-71	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-63	MYB family protein