PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta010042

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

GRAS

Protein Properties

Length: 244aa MW: 28229.2 Da PI: 7.9445

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-19282554	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	246.1	1.4e-75	2	244	132	373
GRAS 132 LasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229 La+Rp gpp+lRiTg++ p++g +e++eetg+rL+++A+++gvpfe+++ +a+++e+l++eeL ++++E+l+Vn+ +l +llde+v ++s+r+ vL+ Pta010042 2 LANRPCGPPMLRITGIEFPQPGfrPAERIEETGRRLEDYAKSFGVPFEYQA-IATKWENLDVEELGLRSDEVLVVNCLGRLRNLLDETVVQDSPRNIVLN 100 89*****************9*************************.7******************************************* PP GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329 ++s++P+v++ + +n++ F +rf eal +ysalfd+le+++pr++++r +E+e++grei nvvaceg+er er et+++W+ r ++aGF ++pl Pta010042 101 KIRSMNPRVFIQGVVNGAYNASFFITRFREALFHYSALFDALETTVPRDNQQRFLIEKEIFGREILNVVACEGSERLERPETYKQWQGRTQRAGFVQLPL 200 ************************************************************************************************ PP GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + ++ ++ + +++++ + + v+e+ ++++lgWk+r++ ++S W Pta010042 201 DRSILSKSRDKVKTFYHKDFGVDEDGNWMLLGWKGRTIHALSTW 244 ************889*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.479	1	225	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-73	2	244	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
CLANRPCGPP MLRITGIEFP QPGFRPAERI EETGRRLEDY AKSFGVPFEY QAIATKWENL 60 DVEELGLRSD EVLVVNCLGR LRNLLDETVV QDSPRNIVLN KIRSMNPRVF IQGVVNGAYN 120 ASFFITRFRE ALFHYSALFD ALETTVPRDN QQRFLIEKEI FGREILNVVA CEGSERLERP 180 ETYKQWQGRT QRAGFVQLPL DRSILSKSRD KVKTFYHKDF GVDEDGNWML LGWKGRTIHA 240 LSTW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-30	2	244	150	378	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.16979	1e-100	root\| shoot\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937596.1	1e-127	scarecrow-like protein 9
Refseq	XP_010937597.1	1e-127	scarecrow-like protein 9
Refseq	XP_029123935.1	1e-127	scarecrow-like protein 9
Swissprot	O80933	1e-106	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A3E2G2	1e-176	A3E2G2_PINRA; SCARECROW-like protein 1
STRING	ERN07921	1e-125	(Amborella trichopoda)
STRING	XP_008799752.1	1e-125	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-109	GRAS family protein