PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010054
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 244aa    MW: 27654.1 Da    PI: 9.9595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-62782547PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.41.3e-21173223155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+ykGVr+++ +g+W+AeIrdps+     r +lg+++taeeAa+a+++a++k++g
  Pta010054 173 SKYKGVRQRR-WGKWAAEIRDPSK---GVRLWLGTYDTAEEAAQAYDKAARKING 223
                89*****998.**********965...4************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.7E-3218242IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541711.44E-22173232IPR016177DNA-binding domain
PfamPF008472.9E-14173223IPR001471AP2/ERF domain
CDDcd000181.15E-33173230No hitNo description
PROSITE profilePS5103223.433174231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-31174232IPR001471AP2/ERF domain
SMARTSM003801.1E-36174237IPR001471AP2/ERF domain
PRINTSPR003671.8E-10175186IPR001471AP2/ERF domain
PRINTSPR003671.8E-10197213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MPGPQIFPQS LCTSTALKTS KKVRGQNKVN KQYDPDNERV QHHLAILTRT VRVICTDPDA  60
TDSSSDEEAV RLEPKRVVRE IYIPADCSPS VSDSEDEYQL PICSSLPFSQ IEEECKDVWQ  120
EFYDPREKKP KKKTKGKKVS RKQRTMLKAF ERVKTGRVSK SSPALRSFAD KTSKYKGVRQ  180
RRWGKWAAEI RDPSKGVRLW LGTYDTAEEA AQAYDKAARK INGPSAPTNF SSSCTSCISE  240
RNPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17166230671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127141KKPKKKTKGKKVSRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.346623e-39root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385728.15e-40ethylene-responsive transcription factor ERF034-like
TrEMBLA0A0C9RXU05e-96A0A0C9RXU0_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_5206_2819 transcribed RNA sequence
STRINGPP1S293_53V6.12e-39(Physcomitrella patens)