PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010074
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bZIP
Protein Properties Length: 243aa    MW: 26667.5 Da    PI: 7.4188
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-36820PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.11.5e-2196159164
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                e+elkr++rkq+NRe+A+rsR +K++e+eeL  kv++L++eN+aL++e++ + +e++kl se+e
  Pta010074  96 ERELKRQKRKQSNRESAKRSRMKKQMECEELSAKVETLTSENMALRNEINLIAEESEKLASENE 159
                89***********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.9E-1890155No hitNo description
SMARTSM003383.5E-2196160IPR004827Basic-leucine zipper domain
PfamPF001704.5E-1996159IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.57698161IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.0E-1199154No hitNo description
CDDcd147021.63E-19101150No hitNo description
PROSITE patternPS000360103118IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
XTLQYNAQAG EANTTVNRST MALVPPAPVP GMSTVSLPTT NLNIGMGVYN VPAQGSVTPV  60
KGRQGTTNSV STIVPAASQL IPGHDGVPSE LWVQDERELK RQKRKQSNRE SAKRSRMKKQ  120
MECEELSAKV ETLTSENMAL RNEINLIAEE SEKLASENES LKVMLRNYQR EDRVGDSERN  180
GPRETQSQFM QQGGNGYPQV LSKISNLSSS QRDEQRESEM SDSTGKCHAV LEANVRSDRV  240
AAG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ501B22e-30BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0D6QXL01e-93A0A0D6QXL0_ARACU; Uncharacterized protein
STRINGERN175248e-40(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-32basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]