PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010122
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WOX
Protein Properties Length: 242aa    MW: 26997.8 Da    PI: 7.2957
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25801341PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.81.4e-1654114257
                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                ++R+++t+e ++ Le++F++   +p++ee+ ++ ++l    ++ ++ +++WFqN++a+ k+
  Pta010122  54 KPRWNPTPEHIRLLESMFNSgVTNPTTEEIWRIRAQLeefgEVRDASIFYWFQNKKARTKQ 114
                89*****************99*************************************996 PP
2Wus_type_Homeobox95.25.6e-3153116265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+Ptpe i++Le++++sG+ +P++eei ri+a+Lee+G+++d+ +fyWFQN+kaR +q++
          Pta010122  53 SKPRWNPTPEHIRLLESMFNSGVTNPTTEEIWRIRAQLEEFGEVRDASIFYWFQNKKARTKQRH 116
                        689***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-735114IPR009057Homeodomain-like
SuperFamilySSF466897.01E-1150118IPR009057Homeodomain-like
PROSITE profilePS5007110.7750115IPR001356Homeobox domain
SMARTSM003896.2E-552119IPR001356Homeobox domain
CDDcd000866.26E-554116No hitNo description
PfamPF000463.0E-1454114IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNPNRHWPSM FKVNPSASES QWGEASNPSA ISGHRQSYEG TSSKNEERSQ PESKPRWNPT  60
PEHIRLLESM FNSGVTNPTT EEIWRIRAQL EEFGEVRDAS IFYWFQNKKA RTKQRHSHLH  120
SGETSKSGSE KSKTDQSKEI IGVSEKTANS LGNTGESYSS IVPAAQFFTQ QDHYHLQINE  180
GISNDQCSYT DAVAATAGRG GIFNEGTSEE LKYGRSITVV INNVPFAVPV GPINVKAMFV  240
KM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH91e-106D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-35homeobox-3