PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010214
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family DBB
Protein Properties Length: 239aa    MW: 26050.7 Da    PI: 4.5431
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26630982PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.31e-05334436
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
               ++C+ ++e + + +C+ +   lC  C  ++H g
  Pta010214  3 TMCDFCGEIRSTVYCKADAASLCLPCDGQIH-G 34
               58******99*******************99.4 PP
2zf-B_box19.61.9e-064787542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg...Htvvpl 42
                C+ ++ +++ + C++ +  +C++C  ++H++   H+++++
  Pta010214 47 LCDGCSVEPAAFSCNNHKLSFCHNCDRQSHSNapqHKRKSI 87
               7*****************************989***99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.589147IPR000315B-box-type zinc finger
SMARTSM003363.0E-7147IPR000315B-box-type zinc finger
CDDcd000217.23E-6347No hitNo description
PROSITE profilePS501198.8874387IPR000315B-box-type zinc finger
SMARTSM003361.44887IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGTMCDFCGE IRSTVYCKAD AASLCLPCDG QIHGANALSK RHLRTLLCDG CSVEPAAFSC  60
NNHKLSFCHN CDRQSHSNAP QHKRKSISYY TGCPSPAELA ELWNCELDRQ GGDDKQGSSV  120
PGTRWGNSGK EDVSLETLLA SGIDVGFTQK FGPWMEPSVS SKVGLPPSSQ RNSNVNTRIF  180
DSEGSEGTMK LWDQNMQDLG ICADDDCCDA LNMSDVNLIF ENYEDIFGGP QVESSSMFX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.200360.0embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NUQ91e-109A9NUQ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.15e-40B-box type zinc finger protein with CCT domain