PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010223
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 238aa    MW: 26659.7 Da    PI: 6.1499
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-29790PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.81e-16104154255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr ++ +g+++AeIrd      ++  r++lg+f t e+Aa a+++a+ +++g
  Pta010223 104 RYRGVRKRP-WGKYAAEIRD----SaRHgVRVWLGTFETGEDAAMAYDQAAFAMRG 154
                8********.**********....33236*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.04E-28103163No hitNo description
SuperFamilySSF541713.73E-22104164IPR016177DNA-binding domain
PfamPF008477.6E-13104154IPR001471AP2/ERF domain
PROSITE profilePS5103223.143104162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-30104163IPR001471AP2/ERF domain
SMARTSM003801.3E-35104168IPR001471AP2/ERF domain
PRINTSPR003672.0E-10105116IPR001471AP2/ERF domain
PRINTSPR003672.0E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAWNSQSSVN GAKNYPADHI SSTDPTLGGC FSEELNPFLL NENEYEYEDM VSYEVLKEAI  60
SHGWHPTPSS NTQIKGQSKT AERKEVQRSK PTKKLKAEVS GEKRYRGVRK RPWGKYAAEI  120
RDSARHGVRV WLGTFETGED AAMAYDQAAF AMRGSNAILN FPVEVVRRRS FERGPVLPAS  180
AVKFSCWSSE TSSSTQLFDC NSRIQQLDET QPVLEFETLS VDYLEKLLVS SQGAAADF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-29103165466ATERF1
3gcc_A2e-29103165466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.411e-47shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLH9VAE31e-97H9VAE3_PINTA; Uncharacterized protein (Fragment)