PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010317
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27154.7 Da    PI: 5.5041
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-35803PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81e-26959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri n   rqvtfskRr g++KKA+ELS+LC+a+va+++fsstgkly+yss
  Pta010317  9 KRIANAPARQVTFSKRRRGLFKKAQELSILCEADVALVVFSSTGKLYDYSS 59
               79***********************************************96 PP
2K-box77.53.3e-26791709100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  + + e  +q+++++k++ie++ +++R++ Ge+Le+Lsl+eLqqLe+qLe +l+++RskK e ++++i+ lq+k  ++ een++Lr++l+e
  Pta010317  79 EGQPNLEPETQDIRRIKQQIEEITQTLRNMHGEELEELSLNELQQLEEQLEMGLSHVRSKKGENIVKEINALQQKGIRIIEENTKLRRELKE 170
                4567788899******************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.52161IPR002100Transcription factor, MADS-box
CDDcd002651.27E-36269No hitNo description
SuperFamilySSF554554.58E-31387IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.8384174IPR002487Transcription factor, K-box
PfamPF014864.2E-2086168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAREKIEIKR IANAPARQVT FSKRRRGLFK KAQELSILCE ADVALVVFSS TGKLYDYSSS  60
SMKMILDKYS LYPTTNQKEG QPNLEPETQD IRRIKQQIEE ITQTLRNMHG EELEELSLNE  120
LQQLEEQLEM GLSHVRSKKG ENIVKEINAL QQKGIRIIEE NTKLRRELKE GYLRHVENND  180
AEESLLIEPL ENQDPQSSES ITTYAFNFKL HKSAMKDYED SDTSLQLGLS SQSKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20172172MEF2C
5f28_B1e-20172172MEF2C
5f28_C1e-20172172MEF2C
5f28_D1e-20172172MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.67180.0root| shoot| xylem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942683.19e-70MADS-box protein SVP
RefseqXP_010942684.19e-70MADS-box protein SVP
SwissprotQ9FUY62e-65JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A0K0M7311e-146A0A0K0M731_PINTB; MADS5
STRINGevm.model.supercontig_55.315e-66(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-50MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]