PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010325
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 235aa    MW: 25626.9 Da    PI: 8.2145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-68020PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12165210655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L++l+P+     +k  + a++L +Av+YIk Lq
  Pta010325 165 SIAERVRRTRISEKMRNLQQLVPNM----DKQTNTADMLDEAVDYIKFLQ 210
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.097159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-17162224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-12163214No hitNo description
Gene3DG3DSA:4.10.280.103.7E-17164224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9165210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-14165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
RPGSQMNFMR QGSSTSGLSS QLSDMGLPPV DNLNMPVGSS ADSLGGSSSD DGSLSNGNGV  60
QRYMSSFRVG SWDDTVIVSE GFAGMQDGAA FSARKRVRDL NGKMMPALNL AESQKGEPSS  120
HVPMGLNHQF SLTKSPSEIA MEKLLQDSVP CKIRAKRGCA THPRSIAERV RRTRISEKMR  180
NLQQLVPNMD KQTNTADMLD EAVDYIKFLQ KQVQELSENE PKCNCSCKMN ASETT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625460.11e-74transcription factor bHLH130
TrEMBLQ9SQ792e-70Q9SQ79_PINTA; Helix-loop-helix protein 1A
STRINGXP_008776552.18e-65(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.12e-44bHLH family protein