PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010328
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family TCP
Protein Properties Length: 235aa    MW: 26563.6 Da    PI: 10.4937
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-75472PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP77.34.3e-24342243132
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................................... 65 
                g k +h   h +  +R  R+ ls+ +a +f+ Lqd+LGfd++s+++eWL+++a +ai el++                                      
  Pta010328  34 GSKHQHAMLHDSHRPRHQRMELSVRTAMKFYFLQDMLGFDQPSQAVEWLIEKADAAIRELPQPssnptygaqfvnsnrgavtsscvqtgdlktysqentf 133
                67889999999****************************************************6666666666665555555555544444444444433 PP

        TCP  66 ..ssssaseceaesssssasnsssg...........................................kaaksaakskksqksaasalnlakesrakara 120
                  s                     +                                           ++      +++ +++++ +  + ke +akar+
  Pta010328 134 tdS---------------------EhrpenlreqilaasnnigqkssraktresdsidsigqgekreqRSVVMRSVPSNCRTRETDNGVPPKEFKAKARE 212
                330.....................03344444444444444445555555555544455555555554444444455555555555666666777***** PP

        TCP 121 rarertrekmri 132
                r r+rt+ k + 
  Pta010328 213 RCRQRTKPKDKS 224
                ******998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-2234223IPR005333Transcription factor, TCP
PROSITE profilePS5136918.3763593IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MATHVPGARK VDNGFRVKRT RRDFDASPIS PSSGSKHQHA MLHDSHRPRH QRMELSVRTA  60
MKFYFLQDML GFDQPSQAVE WLIEKADAAI RELPQPSSNP TYGAQFVNSN RGAVTSSCVQ  120
TGDLKTYSQE NTFTDSEHRP ENLREQILAA SNNIGQKSSR AKTRESDSID SIGQGEKREQ  180
RSVVMRSVPS NCRTRETDNG VPPKEFKAKA RERCRQRTKP KDKSYSQQSG ISGIW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.168230.0root| shoot
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-17TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2