PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010355
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26942.5 Da    PI: 8.7136
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-57634PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF368.7e-121272551
               HHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF 25 eELSvLCdaevaviifsstgklyeyss 51
               +ELS+ Cdaeva+i+fs+tgklye+ss
  Pta010355  1 SELSIFCDAEVAMIVFSNTGKLYEFSS 27
               6************************96 PP
2K-box652.7e-22481201183
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                +++ + +++el+ Lk++++nLqr  Rh++GedL++Ls+keLqqLeqqLe++lk+++ kK++ l    +   kk
  Pta010355  48 SKDPQDSNTELTELKRKTDNLQRWRRHVMGEDLDQLSVKELQQLEQQLEEGLKQVKLKKEQQLEGAKKSRHKK 120
                5678999******************************************************997766655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.428129IPR002100Transcription factor, MADS-box
PfamPF003191.7E-8125IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-13142IPR002100Transcription factor, MADS-box
PfamPF014866.5E-1750111IPR002487Transcription factor, K-box
PROSITE profilePS5129711.66651168IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
SELSIFCDAE VAMIVFSNTG KLYEFSSSSM TKILERHRKC STLVEDISKD PQDSNTELTE  60
LKRKTDNLQR WRRHVMGEDL DQLSVKELQQ LEQQLEEGLK QVKLKKEQQL EGAKKSRHKK  120
VGGKLRPSIL SLFFQRYESW NTLFAKTSND ETWFLRHTMA MWKQQLQLSE LRGKYPCDQY  180
PIPISGSSWH STAGNYNTHV LSRHCEPTLH IGCPSGSTGN HIPGHMQSGN YDGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.149160.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_008797646.17e-28(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-20MIKC_MADS family protein