PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010372
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family GeBP
Protein Properties Length: 234aa    MW: 26936.6 Da    PI: 10.2756
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26638633PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57358.91.4e-1854145497
     DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 + w+ +De+++L Gl+ f  k+gk   + i  +++ +++ ++ ++s++ql++K  r K Kf+  ++k  +++ ++ +++h++ +++++k++Wg
  Pta010372  54 AQRWNPKDELAFLNGLLAF-CKRGKGFPKSIAPVFDHIRNTLDNHFSNRQLSDKCSRWKAKFRAAQDK-MKDNTFKYRNSHETATYNICKQLWG 145
                556****************.889999999***************************************.888999******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.0E-1755145IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
RPGENGVLEP PTLKKTLHAV QQESPPKENK KKKAPKPEPV GTPHSSQKSL KKVAQRWNPK  60
DELAFLNGLL AFCKRGKGFP KSIAPVFDHI RNTLDNHFSN RQLSDKCSRW KAKFRAAQDK  120
MKDNTFKYRN SHETATYNIC KQLWGEQEEG GAENEENNED HSIGGGDGEN VLKTSMNGTE  180
KKKKRKPLLP KEKDGEEDMQ KPEDQEYQGP MNDKEDKKKK KKMKMDLKMR RPWL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179186EKKKKRKP
2180185KKKKRK
3181186KKKRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-09DNA-binding storekeeper protein-related transcriptional regulator