PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010498
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family GRAS
Protein Properties Length: 229aa    MW: 26430.5 Da    PI: 6.2468
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-58063PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS176.51.9e-541223145373
       GRAS 145 TgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                T+vg     ++ e++ ++e+L  fAe+l++pf f+v+   + edl+ ++L++k+gE++aVn +l ++ l+ ++ s++    ++L+l+++l+Pk+vvvv++
  Pta010498   1 TAVGY----ESMEMHLIRENLCTFAENLNIPFTFQVVEIPQNEDLNRSMLNLKEGETIAVNYSLGMQGLF-SKDSIA----SILHLINRLRPKIVVVVDH 91 
                55555....778999*********************9999*****************************9.444444....5****************** PP

       GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                e +  ++sF+++f+eal++y+ lf+slea  + + e+  ++E+++++++i+nvv ++ ++   + e+l +Wr++++++GF+p+ +s+++ kqa++l r  
  Pta010498  92 ENEQAGSSFAQKFMEALQFYALLFESLEAV-HMNMETIEMIEKFVMAPRICNVVEAAYRR-HREGENLPNWRSMFQASGFTPMMMSNFTHKQAESLSRSR 189
                ***************************988.6788999******************9996.666788********************************9 PP

       GRAS 345 k.sdgyrve....eesgslvlgWkdrpLvsvSaW 373
                +   g+  e    ++++ l+lgW+++ LvsvSaW
  Pta010498 190 QqRFGFCFEavkkQQEQILLLGWQRQILVSVSAW 223
                97889876655544566677************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.4371199IPR005202Transcription factor GRAS
PfamPF035146.7E-521223IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
TAVGYESMEM HLIRENLCTF AENLNIPFTF QVVEIPQNED LNRSMLNLKE GETIAVNYSL  60
GMQGLFSKDS IASILHLINR LRPKIVVVVD HENEQAGSSF AQKFMEALQF YALLFESLEA  120
VHMNMETIEM IEKFVMAPRI CNVVEAAYRR HREGENLPNW RSMFQASGFT PMMMSNFTHK  180
QAESLSRSRQ QRFGFCFEAV KKQQEQILLL GWQRQILVSV SAWIVNNVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-1720223170374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.79130.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M6Y21e-161A0A0K0M6Y2_PINTB; HAM2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.12e-29GRAS family protein